rs29387729 SNP Detail

Summary

• ID
  rs29387729
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58112333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT TCTCCCCTTT CACCTCTTTG
  R
  CACAATGTTA AATGCTTTCT TTCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38669277	mCV23852112	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss132192039	ENSMUSSNP2900438	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss323688642	CHEV_11_58035009	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29387729					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58112333 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	mRNA-UTR
Tssr101708	transcription start site region 101708	1317 bp downstream
Tssr101709	transcription start site region 101709	997 bp downstream
Tssr101710	transcription start site region 101710	979 bp downstream
Tssr101711	transcription start site region 101711	793 bp downstream
Tssr101712	transcription start site region 101712	752 bp downstream
Tssr101713	transcription start site region 101713	433 bp downstream
Tssr101714	transcription start site region 101714	392 bp downstream