rs29387763 SNP Detail

Summary

• ID
  rs29387763
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53190033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTCAGTA GATTAACATC
  TTTTTTAAGA CAAAGCTTTC TTTTCTGCGT AGCCCTGCCT ATCCTGAAAT GGTCTCTATG
  AACCAGGCTG GCCTCGAACT CACTGCAGCC TGCCTCTGCC TCCCTGCGAG AGCTGGGATT
  AAAGGCCTGT GCCACCAGCG CCAGATAAAT AAAATTTTAA CGCACCTGTA ATACCAGATT
  Y
  TAGCAGACAG AAGCAGAATG AAAATTTTAG GTCATCCTGG GCTAAATGTG GGGGAAAAAA
  TCCTACATAT ATCTAAAAAG TAGACTCCCT TTTACTCCAG CAAGCTCTGA GTGAGTCTTT
  TTTTTTTTTT TTTTTTTTTT TGCAGATTTG TCTATACTGG TCCCATAACT TCATGTAAGT
  TCTAGAAGTC AAACAGAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38672087	mCV27570890	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29387763					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53190033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2859	CpG island 2859	387 bp proximal
Hspa4	heat shock protein 4	within coordinates
Rr369205	regulatory region 369205	1207 bp upstream
Rr446993	regulatory region 446993	142 bp proximal
Rr446994	regulatory region 446994	1241 bp proximal
Tssr101379	transcription start site region 101379	649 bp upstream
Tssr101380	transcription start site region 101380	678 bp upstream
Tssr101381	transcription start site region 101381	1600 bp upstream
Tssr107908	transcription start site region 107908	971 bp downstream
Tssr107909	transcription start site region 107909	981 bp downstream
Tssr107910	transcription start site region 107910	993 bp downstream
Tssr107911	transcription start site region 107911	1126 bp downstream
Tssr107912	transcription start site region 107912	1167 bp downstream
Tssr107913	transcription start site region 107913	1324 bp downstream
Tssr107914	transcription start site region 107914	1480 bp downstream