rs29387801 SNP Detail

Summary

• ID
  rs29387801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69913558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAGAATCA GAGAAAGGAT GTTAAAGGAT GGGGTAGAGG
  GACTAGCCAG AAAATAAGTA ATTTAAGAAT TTGAGGGGTA AAGAATAGTA AATTCATGCC
  R
  GTAATCCCAG AACTTGGAGG GTGGAGGTTG GGAAGTGGAG GCAGGAGAAT TAGGAGTTTC
  TCAAAGTCAC CCTCAGCTAC ATAAAGAGTT TGGGACCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38667010	mCV22952749	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss132364059	ENSMUSSNP6389962	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss323732628	CHEV_11_69836234	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29387801					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69913558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	871 bp distal
Cpgi3169	CpG island 3169	1119 bp proximal
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	1637 bp downstream
Rr402686	regulatory region 402686	1270 bp downstream
Rr450198	regulatory region 450198	1745 bp distal
Rr450199	regulatory region 450199	1310 bp distal
Rr450200	regulatory region 450200	688 bp distal
Rr450201	regulatory region 450201	793 bp proximal
Tssr102634	transcription start site region 102634	1190 bp upstream