rs29387999 SNP Detail

Summary

• ID
  rs29387999
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69911503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATTGGAAT ATGTGGGTTC TCCTAACGCA TGAGCACATG
  AAATCCAGTA AGGGTGAGGG GCTCCGCAGC ACTGGTTAAC TATTCTGGGT GGATGCATTT
  W
  TTCATTTTTC TGCCCCAAAT TCCTGTGTGT TCGATGGAGC ACATGATTGA GCAGCCCTGA
  AGGTAGGAGG CTTGTAGAGA GGATCATATG CATTCGGGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38671899	mCV22952704	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	T
ss132364023	ENSMUSSNP1505263	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		T
ss323732617	CHEV_11_69834179	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29387999					SNP	A	A	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69911503 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	578 bp proximal
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	118 bp upstream
Rr402686	regulatory region 402686	484 bp upstream
Rr450197	regulatory region 450197	1788 bp distal
Rr450198	regulatory region 450198	289 bp proximal
Rr450199	regulatory region 450199	724 bp proximal
Rr450200	regulatory region 450200	1346 bp proximal
Tssr102633	transcription start site region 102633	1830 bp downstream