rs29388068 SNP Detail

Summary

• ID
  rs29388068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28534660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTACCGGAG GTCACAAAAT CCTCAAGTTC AGGAAATCAG
  GGCAAAGAGC TGTTAAATTC AGCCCTTTGG GGACCTCCAC CCCATTCCCA GGCCTTTGTT
  Y
  TCTCTAAAAT CTCACCACCT TATGAAGAAG CTTCAGGTGG AAGTACTTGG CCCTTTTAAA
  GTTCGTTTGG GAAATATCAA GGCCTTTAGA AAATAAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38666616	mCV23805083	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss131877098	ENSMUSSNP1420971	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29388068					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28534660 () rs orientation: forward

Symbol	Name	Function Class
Ccdc85a	coiled-coil domain containing 85A	336 bp upstream
Cpgi2667	CpG island 2667	225 bp distal
Rr233134	regulatory region 233134	60 bp distal
Rr246448	regulatory region 246448	59 bp distal
Rr385862	regulatory region 385862	885 bp downstream
Tssr107205	transcription start site region 107205	555 bp upstream
Tssr107206	transcription start site region 107206	431 bp upstream
Tssr107207	transcription start site region 107207	351 bp upstream