rs29388238 SNP Detail

Summary

• ID
  rs29388238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115070863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC GTGAAGCCCT GGTGGAGCCA
  R
  CTTCAGAGAG CCCCAGGCCA GCCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss38672321	mCV22628347	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss132872289	ENSMUSSNP3556590	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29388238					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115070863 () rs orientation: forward

Symbol	Name	Function Class
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Tssr105846	transcription start site region 105846	within coordinates
Tssr105847	transcription start site region 105847	272 bp upstream
Tssr105848	transcription start site region 105848	918 bp upstream