rs29388248 SNP Detail

Summary

• ID
  rs29388248
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121323819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGTCAAG TCCATTTACT
  TAGCATGGCC TTGAAGAATC ATAACCAGTA GTGAGGGGAG CAAAGAAGGC CAGAGTGTGT
  TTGTGTTTGA CATAAGCCTG CGAGATCGAC TCCAAATCCA TGAGGACGCA GAGAGTTAAC
  AAAGCTTTCC TCTGATCTGA GTGGGAAGTC AATGCTGCCT GCAGAAAATG GCCACTGTAC
  Y
  CCTTTCCTCA CAGATATTAC TGCCTGAAGA CTGATCCCCG CAGGGACTGC TCCTACTGAG
  ATCAGTTAAG CCCGCCCTCT TGATTTAGCT GCATACCACA ACCCTGCCTA CTCGTTCAGC
  TGTAAATAAT AAACACACTG ATGTTCTGGG ATCTTGAAAC TTCTCCATCA GACATCCTTC
  CCGGCTTTTC TGTGTGTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38667340	mCV27546137	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss132912416	ENSMUSSNP5434067	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29388248					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121323819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	1814 bp proximal
Fn3k	fructosamine 3 kinase	1960 bp upstream
Fn3krp	fructosamine 3 kinase related protein	1705 bp downstream
Rr461974	regulatory region 461974	within coordinates
Rr461975	regulatory region 461975	1430 bp proximal
Tssr106404	transcription start site region 106404	1955 bp upstream