rs29388287 SNP Detail

Summary

• ID
  rs29388287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96184875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT CCTGGAGTCT GAGTTCAAAG
  Y
  TAAGTCCTGT CTTTCGCCGC CCAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38672128	mCV27575656	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29388287					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96184875 () rs orientation: forward

Symbol	Name	Function Class
2700088M07Rik	RIKEN cDNA 2700088M07 gene	805 bp upstream
Cpgi3639	CpG island 3639	445 bp distal
Cpgi3640	CpG island 3640	488 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	within coordinates
Rr386515	regulatory region 386515	1682 bp downstream
Rr455356	regulatory region 455356	1563 bp distal
Rr455357	regulatory region 455357	416 bp distal
Rr455358	regulatory region 455358	621 bp distal
Rr455359	regulatory region 455359	189 bp distal
Rr455360	regulatory region 455360	644 bp proximal
Tssr104478	transcription start site region 104478	1890 bp downstream
Tssr104479	transcription start site region 104479	1541 bp downstream
Tssr110326	transcription start site region 110326	1356 bp downstream