rs29388311 SNP Detail

Summary

• ID
  rs29388311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29474501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCATCTGGA TTCTGAGTCT TCATTTGGTA AAAGTGAACG
  ATTAGGATTT TGTTTTAACA CCCCTTATCT AATCTATATG TTTTCTGAAG GAAAACATCA
  Y
  CCCTCCTGCA AATGTAGTCC TTATTATACA CTGTTACCAG TACCCAATAA ATTGGCTCCA
  GGTTTGCCAG GACTAGCTTG TAACCAAAGT CATTCAAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38670120	mCV25279140	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss131895961	ENSMUSSNP3858013	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss323610898	CHEV_11_29424501	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29388311					SNP	T	T	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29474501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2674	CpG island 2674	1553 bp proximal
Gm57396	predicted gene, 57396	1478 bp downstream
Mtif2	mitochondrial translational initiation factor 2	1907 bp upstream
Rr369145	regulatory region 369145	1793 bp upstream
Rr444173	regulatory region 444173	1322 bp proximal
Rr444174	regulatory region 444174	1873 bp proximal
Rr444175	regulatory region 444175	1967 bp proximal
Tssr100719	transcription start site region 100719	1906 bp upstream
Tssr100720	transcription start site region 100720	1922 bp upstream
Tssr107213	transcription start site region 107213	1842 bp downstream