rs29388549 SNP Detail

Summary

• ID
  rs29388549
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102211048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACAAAAA GTTCACCCCT
  GTGTCGTAGT AGGGTGTCAG TGGGAGTTGG GGAGGTTTTT CAAGAAGCAG CGGAACGGCC
  ATCCCTTTAC CCTGGGCTTC AGTAACTAGG CCGCGACCGG GGTAGGGGTT TAGAGCAAAA
  TCCCAGCGCG TTTGTGCGAA AGAGCTGGAA GGGGGAAGTC GGAACCGGGA ACGGAGCTTC
  K
  TGCGTCTCCC CCTCGGTCTC TGCTTCCAGT TGCCTGCAAG CTCCCCCTTT AATTTTTTTT
  TTTTCTCCTC CTTTCCTTTA ATCTAATTTC TTCCAACTCC ACCTTTGTTG TTACCGGCGT
  CACGCCTGGA TCAGCCAATC CCCTTCTCGC AATCAGCTTG TCAAAAAGGC TTGGCCAGCC
  CTGAGAAAGC AGGCCGCGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38671763	mCV23672166	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss132735551	ENSMUSSNP2870706	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29388549					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102211048 () rs orientation: forward

Symbol	Name	Function Class
C030013E06Rik	RIKEN cDNA C030013E06 gene	within coordinates
Cpgi3917	CpG island 3917	within coordinates
Rr245873	regulatory region 245873	within coordinates
Tssr111032	transcription start site region 111032	1218 bp upstream
Tssr111033	transcription start site region 111033	1117 bp upstream
Tssr111034	transcription start site region 111034	873 bp upstream
Tssr111035	transcription start site region 111035	776 bp upstream
Tssr111036	transcription start site region 111036	363 bp upstream
Tssr111037	transcription start site region 111037	43 bp downstream
Ubtf	upstream binding transcription factor, RNA polymerase I	480 bp upstream