rs29388877 SNP Detail

Summary

• ID
  rs29388877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96092577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAAGAAAAAA AAAATAAATA TTGTTAATGT TCTCATTTTT ATTTAAAACG TTTTGTACCT
  GTGTTGAAAG CTAGACAAGA TCCAACAAGG ATAATGATTT ACTAGCAGAC AGGAAATTAA
  CACAATGCCA GGGCAGAGTG TCGCAGCTCC CCTCAGGGCC TCTGGCTCCC TTCCTCTCCT
  CAATGCCTTC TCAGAAGTTC CTGTGGTAGC TTCCGAGGAG ACACTGGAAG GGGTCCCAAC
  ACAGCAGTGT TGAACCCTTT CTGTACAGGA GCATCATGAA GCATCATGGG ATAGGTCACC
  Y
  CCTGAGAGTA CTAACTTGCT AACTTGAAGT TTGGGTGGGT AAGTTCAGCT GCAGACATTT
  AGCAAATACC CAATTTCCCC CAAACTGGCA CCTTTTCTAG TGTCCCTCAG GGCTATTGTC
  CCCCACCCTG AACTCATTAC TTAGTAAAGA AATGGAGACA ATAGTGCCAC TCACTTTATT
  TGTGTCAAAA TGGTAGAATC TTGGTCCCAA AAGGGGACTT CTCTTAATTT CTAAGTTCCA
  GGTCTTTACC AGAAGACAGA CCAGGAAGCC AGTCTCTTTC CTAACCCCTA ACAAACTTCT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38669342	mCV27576771	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss132675286	ENSMUSSNP1837320	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29388877					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96092577 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	1507 bp proximal
Gm11538	predicted gene 11538	1703 bp upstream
Gm30134	predicted gene, 30134	within coordinates
Gm56412	predicted gene, 56412	1921 bp upstream
Gm56413	predicted gene, 56413	1440 bp upstream
Rr386513	regulatory region 386513	993 bp downstream
Rr455321	regulatory region 455321	272 bp distal
Rr455322	regulatory region 455322	within coordinates
Rr455323	regulatory region 455323	622 bp proximal
Rr455324	regulatory region 455324	1101 bp proximal
Rr455325	regulatory region 455325	1706 bp proximal
Tssr104437	transcription start site region 104437	1690 bp upstream