rs29389301 SNP Detail

Summary

• ID
  rs29389301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:84070371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCCCTGG GTTCCTTTCC
  CGCGCTACTC GCCAGCAGGT CCTTGAGGGG AGTTTCGAGC GGAACCATAG CTTCCACTCC
  GCTCTCTGCC GGGAGGTGGA GCCGTTGGGC CGGCCCCAAA CCCGCCCAGA CAGAAGGGGA
  ACCCACCACG TCCCAGACCC GCCCGCCCTC GCACCGCTCG GCCCCGAATG GCAGAGCCGC
  R
  CTCGGACCAT CGGCATCGCC TCACGTCGCC CCGCCCCGCG CCGCGCGCCC ATTGGCTGAC
  GCGGGCCCGA GCCCGCGCCT CGCCCCCTCC CACTGGCGCC CAGACCGCGC GGCTGCCCGG
  AGCGGGGTCG GAGGTGAACG GCCTGGAGTA ACCCCGGACG CGCGCGGACC TAATGGGGCT
  GGGCGGCTGA GGTGGGCGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38673610	mCV24638960	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss132477375	ENSMUSSNP398735	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss323769373	CHEV_11_83993047	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29389301					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:84070371 () rs orientation: forward

Symbol	Name	Function Class
Acaca	acetyl-Coenzyme A carboxylase alpha	within coordinates
Cpgi3430	CpG island 3430	within coordinates
Rr453130	regulatory region 453130	within coordinates
Rr453131	regulatory region 453131	95 bp distal
Rr453132	regulatory region 453132	431 bp proximal
Tssr103797	transcription start site region 103797	1892 bp downstream
Tssr103798	transcription start site region 103798	66 bp upstream
Tssr103799	transcription start site region 103799	113 bp upstream
Tssr103800	transcription start site region 103800	247 bp upstream
Tssr103801	transcription start site region 103801	307 bp upstream
Tssr103802	transcription start site region 103802	321 bp upstream
Tssr103803	transcription start site region 103803	764 bp upstream