rs29389508 SNP Detail

Summary

• ID
  rs29389508
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68919080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTTTTGTC TTTCAATCAT GCTCTGTGTG TGGGTGTATG
  AGTGTATGTG TGTGTATGTG CACATGTTTG AAACAGGGTC TGTATAGCCC TGACTGTCTC
  R
  TCCGGGAATT CACTCTGTGG ACCAGGCTGA CCATGAACTC ACAGAGATCC ACCTGCCTCT
  GCCTCCCAAG TGCTGGGTTC TGGGTTTAAA GTCATGCGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38670411	mCV23351331	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss323727066	CHEV_11_68841756	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29389508					SNP	G	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68919080 () rs orientation: forward

Symbol	Name	Function Class
Ctc1	CTS telomere maintenance complex component 1	within coordinates
Gm74108	predicted gene, 74108	within coordinates
Rr235731	regulatory region 235731	521 bp proximal
Rr251243	regulatory region 251243	within coordinates
Rr251244	regulatory region 251244	1521 bp proximal
Rr253641	regulatory region 253641	496 bp proximal
Rr386226	regulatory region 386226	128 bp downstream
Tssr102359	transcription start site region 102359	1420 bp downstream
Tssr102360	transcription start site region 102360	1131 bp downstream
Tssr102361	transcription start site region 102361	918 bp downstream
Tssr102362	transcription start site region 102362	895 bp downstream
Tssr102363	transcription start site region 102363	272 bp downstream