rs29389539 SNP Detail

Summary

• ID
  rs29389539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28534725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT ACTTGGCCCT TTTAAAGTTC
  R
  TTTGGGAAAT ATCAAGGCCT TTAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38671836	mCV23805072	ABI	CRAMUS_MOUSE	f	SNP	G		A	G	A
ss131877104	ENSMUSSNP6181224	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss323608757	CHEV_11_28484725	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29389539					SNP	G	G	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28534725 () rs orientation: forward

Symbol	Name	Function Class
Ccdc85a	coiled-coil domain containing 85A	401 bp upstream
Cpgi2667	CpG island 2667	290 bp distal
Rr233134	regulatory region 233134	125 bp distal
Rr246448	regulatory region 246448	124 bp distal
Rr385862	regulatory region 385862	950 bp downstream
Tssr107205	transcription start site region 107205	620 bp upstream
Tssr107206	transcription start site region 107206	496 bp upstream
Tssr107207	transcription start site region 107207	416 bp upstream