rs29389599 SNP Detail

Summary

• ID
  rs29389599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6338267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTACTTAG CACATGAGAT
  ACTTGTTAAA TAGGCCTGGT ACTCTAGTAG GAACTTTGTA GGTGACAACC GTCATGTTGC
  AATGTCAAAG GGCTGGATGA GCCTACCAGC CTTACAGAAT GCCAAAAGTA TCTACAGGTC
  CCTTCCGTTT GGCTAGAAAA TGGTTGTTTA AAGTATTTGT GCACATAATT ACTTTGCTAG
  Y
  TTGTTACATC GTTGCACTAT CTGCCGCATG CAGAAGGGAT GCAGGTCAAA GGTCAGAAGG
  GAGCAGGGAA TTCTGGGAAA TTCCACCTGT TGGTTCTGAG AAGCAAAACC TGGATCTCTA
  CAAGACCAGT CAACCCTTTC TTTTCTTTTT TAATTTTATA TACTTTTTAT TTTATTTTAT
  TTTGGCTTTT CAAGACAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38672245	mCV22932796	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss131642775	ENSMUSSNP1122450	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29389599					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6338267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2557	CpG island 2557	544 bp proximal
Rr246943	regulatory region 246943	333 bp proximal
Tssr100241	transcription start site region 100241	794 bp upstream
Tssr100242	transcription start site region 100242	818 bp upstream
Tssr100243	transcription start site region 100243	850 bp upstream
Tssr100244	transcription start site region 100244	1063 bp upstream
Tssr100245	transcription start site region 100245	1161 bp upstream
Tssr100246	transcription start site region 100246	1175 bp upstream
Tssr100247	transcription start site region 100247	1286 bp upstream
Tssr100248	transcription start site region 100248	1309 bp upstream
Zmiz2	zinc finger, MIZ-type containing 2	807 bp upstream