rs29389723 SNP Detail

Summary

• ID
  rs29389723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32202581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTAATAAAA GCCAGGCACG GTGGCCCACG CCTTTAATCC
  CAATGCTCAG GAGGCAGAGG CAGGTAGATT TCAGTGAGTT TCAGGCTAGT CTGATCTATA
  Y
  AGCAAGTTCC AGGCCAGACA AAGTTACATT CTGAGACCCA GTCTCAACAG AAACAAAACA
  AAAAGAGAGA CAGTGCCAGA AAGGTGGCTC AGGGGCTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38673043	mCV23784195	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss131932959	ENSMUSSNP6727525	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29389723					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32202581 () rs orientation: forward

Symbol	Name	Function Class
Nprl3	nitrogen permease regulator-like 3	within coordinates
Rr349	regulatory region 349	1212 bp distal
Rr350	regulatory region 350	within coordinates
Rr923	regulatory region 923	1217 bp distal
Rr1084	regulatory region 1084	238 bp distal
Rr444552	regulatory region 444552	763 bp distal