rs29389938 SNP Detail

Summary

• ID
  rs29389938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69048877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGCACTCT GCTGTCCAGT CTAGGAGTGC AGGATGCTAG
  GGAGTCCTGG GCGCTGACTC TTTTGCCCCC AAGATTCTAA ATAGCTCCTG CAGCCTCAAG
  Y
  GACTGGGACC TTAGGAAGGA TGGATAAGGC AGGGGTCTTT CCCTGCCTTG GGTAAATGGG
  CCCAGCAGAG GGCAGCCAAG TCAGGGGGTT CACATCTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38667841	mCV24154634	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss132350048	ENSMUSSNP5703746	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss323727821	CHEV_11_68971553	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29389938					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69048877 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	within coordinates
Cpgi3111	CpG island 3111	716 bp distal
Rr449891	regulatory region 449891	1052 bp distal
Rr449892	regulatory region 449892	781 bp distal
Rr449893	regulatory region 449893	58 bp proximal
Tssr102419	transcription start site region 102419	1150 bp downstream
Tssr102420	transcription start site region 102420	1135 bp downstream
Tssr102421	transcription start site region 102421	1000 bp downstream
Tssr102422	transcription start site region 102422	990 bp downstream
Tssr102423	transcription start site region 102423	970 bp downstream
Tssr102424	transcription start site region 102424	941 bp downstream