rs29390204 SNP Detail

Summary

• ID
  rs29390204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69806394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGATCCTA ACTCCATGTC TCCTCCTTCT GTGGATCAGT
  ACTGTTAATC CCAATCATTC AAGAACAAAT ATACCAAGCA TGTGTATGTA GGAGCTGAGC
  R
  TAAAGGCATA TATATATACA TATGGGGTTT TTCCTAAGCA GTGAGCTTTC ATTTCCCCTT
  AGACCCGGCA CTACGTGGGA TCAGCAGCTG CTTTTGCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38674495	mCV23933435	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss132362926	ENSMUSSNP3235284	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
ss323732166	CHEV_11_69729070	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29390204					SNP	G	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69806394 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3157	CpG island 3157	859 bp distal
Eif5a	eukaryotic translation initiation factor 5A	1146 bp downstream
Gm72765	predicted gene, 72765	1144 bp upstream
Gps2	G protein pathway suppressor 2	within coordinates
Neurl4	neuralized E3 ubiquitin protein ligase 4	1746 bp downstream
Rr235842	regulatory region 235842	207 bp proximal
Rr247070	regulatory region 247070	within coordinates
Rr402680	regulatory region 402680	1480 bp downstream
Tssr102552	transcription start site region 102552	1490 bp downstream
Tssr102553	transcription start site region 102553	1405 bp downstream
Tssr102554	transcription start site region 102554	1375 bp downstream
Tssr102555	transcription start site region 102555	1302 bp downstream
Tssr102556	transcription start site region 102556	1271 bp downstream
Tssr102557	transcription start site region 102557	472 bp upstream
Tssr102558	transcription start site region 102558	1732 bp upstream
Tssr108878	transcription start site region 108878	1407 bp downstream
Tssr108879	transcription start site region 108879	1674 bp downstream