rs29390257 SNP Detail

Summary

• ID
  rs29390257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68916835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATAACAAA ATAGCCAACC AGACAAACAG AAGAGGAAGA
  ATAAGAGGAA AGTCATGAGG TCTTTGGAGT GAAATTGTTG TGGGAAGGGC CTTTGGCCGA
  Y
  GGGCAGCATT ATGGTTAAGG GCGGGGGTCT CATGTTTAAT GTTACCTCCC TCTGCCTAAG
  CCAGATCCCT GCTCAGATGG TGTGGCACCG AGTCCTCCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38673892	mCV23351009	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss132347452	ENSMUSSNP3116973	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss323727053	CHEV_11_68839511	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29390257					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68916835 () rs orientation: forward

Symbol	Name	Function Class
Ctc1	CTS telomere maintenance complex component 1	within coordinates
Gm74108	predicted gene, 74108	within coordinates
Rr251243	regulatory region 251243	within coordinates
Rr386226	regulatory region 386226	within coordinates
Tssr102357	transcription start site region 102357	34 bp upstream
Tssr102358	transcription start site region 102358	57 bp upstream
Tssr102359	transcription start site region 102359	815 bp upstream
Tssr102360	transcription start site region 102360	1079 bp upstream
Tssr102361	transcription start site region 102361	1285 bp upstream
Tssr102362	transcription start site region 102362	1331 bp upstream
Tssr102363	transcription start site region 102363	1966 bp upstream