rs29390605 SNP Detail

Summary

• ID
  rs29390605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:46708624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATGTGAC CACCACCACC
  CCAGAGCTGC TTCCAACAAC AGTCATGACC ACATCTGTTC TCCCAACCAC CACACCACCC
  CAGACACTAG CCACCACTGC CTTCAGTACA GCAGTGACCA CGTGCCCCTC AACAACACCT
  GGCTCCTTCT CACAAGAAAC CACAAAAGGG TCCGCCTTCA CTACAGGTGA GGATTGTCTG
  Y
  TGTTTTCCTT CTGTTTGTCA GATATGGTGT GGTTTCCTTG AAACAGGACT CTTCTACAGT
  GGGCAACCCG GTGACCTGCA CGTGCGCTCA TGTGTGTGTG TTTCTTTTCC CTTTATGTTT
  TTGAAAAGTC AGCATTTTGG GTTCTCCACT TGACCTCTGA GGAGTCTTGC AGAATCTGTG
  TGTTGAAGGT TATTCTAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38675345	mCV25344037	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	C
ss132104554	ENSMUSSNP4324171	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss323660825	CHEV_11_46631299	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29390605					SNP	T	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:46708624 () rs orientation: forward

Symbol	Name	Function Class
Timd4	T cell immunoglobulin and mucin domain containing 4	Intron
Tssr101132	transcription start site region 101132	233 bp downstream
Tssr101133	transcription start site region 101133	207 bp downstream