rs29390851 SNP Detail

Summary

• ID
  rs29390851
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68920044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGAGAGCT GACTCCCACA AGTTGTCCTT TGACCTCCAC
  AAAAGTGAAA TGATACCCCC CACCCCCAGT AAATGTAATA AAACAAGCTC CCAAAACTGT
  W
  GCTTGGAATA TAGAATTCTG TTGGGTTTTG CTTTGCTTTG TTTTCGTTAT TGCTTTTTTT
  TTTTTTAACC TGAGGCAGTC TTGTTGTATA GCCCATGCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38675906	mCV23351378	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss132347529	ENSMUSSNP3669363	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			T
ss323727077	CHEV_11_68842720	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29390851					SNP	A	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68920044 () rs orientation: forward

Symbol	Name	Function Class
Ctc1	CTS telomere maintenance complex component 1	within coordinates
Gm74108	predicted gene, 74108	within coordinates
Rr235731	regulatory region 235731	44 bp distal
Rr251243	regulatory region 251243	644 bp distal
Rr251244	regulatory region 251244	557 bp proximal
Rr251245	regulatory region 251245	1557 bp proximal
Rr253641	regulatory region 253641	within coordinates
Rr386226	regulatory region 386226	1092 bp downstream
Tssr102361	transcription start site region 102361	1882 bp downstream
Tssr102362	transcription start site region 102362	1859 bp downstream
Tssr102363	transcription start site region 102363	1236 bp downstream