rs29390957 SNP Detail

Summary

• ID
  rs29390957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:117057028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCAGCCCT ATCGCACACT GGGGAAACTG AGGCTCTGAG
  GGCCTGGGGT CTGTGCCCAC TGTCTCAGAT AGCAGGAGAA GAAAACAGGA GCCAGGCAGG
  Y
  AGTGCCTCAG GACTCCTGAC CTTGGCACTC TGTGTCCCAC TGGGGCAGAG GGACAAGAGA
  CCCCTGAAGA CCAGCACAGA TCCTAGCAGA GGTCAGGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38676956	mCV24630465	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss132894819	ENSMUSSNP4563476	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29390957					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:117057028 () rs orientation: forward

Symbol	Name	Function Class
D11Mit103	DNA segment, Chr 11, Massachusetts Institute of Technology 103	1117 bp proximal
Tssr112020	transcription start site region 112020	460 bp upstream