rs29390987 SNP Detail

Summary

• ID
  rs29390987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102212112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTTTGGAT TTTTGAGACA
  GGGTTTTTCT GTGTAGCCTT GGCTCTCCTA GAGCTAGCTC TGTTTACCAG GCCAGCCTCG
  CACTTAACCC GAGATCTGCC TGCCTCTGCC TCCCAATTGC TGAGATTTTA ATATTTTATT
  TTTTATTAAA GAGTCTATCC CCTTCGCTTG CTTTTACTCC CTTCCTCTCT TCCCTCTGTC
  Y
  GTTTTCTCTC CATTCCCCCC ACCGCCACAT ACCTAGATCT GCCTCTGGAA TACAAAACAT
  TTGGTGTTGG ATCAAGCCCT CTCCCACCAC ACTAAAAAAG CAGAGCTTTT AAAGGGCTAT
  TGATGTGTTT TGAAAAGGGT AAAGTAGATT TTTAATTTTA TGTACATTGG TGTTCTGCCT
  GCATATACAT TTGTGTTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38675205	mCV23672175	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss132735563	ENSMUSSNP6576251	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29390987					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102212112 () rs orientation: forward

Symbol	Name	Function Class
C030013E06Rik	RIKEN cDNA C030013E06 gene	within coordinates
Cpgi3917	CpG island 3917	559 bp distal
Rr245873	regulatory region 245873	111 bp distal
Tssr111034	transcription start site region 111034	1937 bp upstream
Tssr111035	transcription start site region 111035	1840 bp upstream
Tssr111036	transcription start site region 111036	1427 bp upstream
Tssr111037	transcription start site region 111037	1008 bp upstream
Ubtf	upstream binding transcription factor, RNA polymerase I	1544 bp upstream