rs29391008 SNP Detail

Summary

• ID
  rs29391008
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82326676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGACACCT TCCTGGAACT GGCATGCCTG ATCCAGTCTA
  TACAGAGAAC ATGCATTCAC AGATGTCCTT ATCATATCCC CGTTCCACTG GACATTATAT
  W
  TTTTTAGCAG GAATTTAGTA AGCTTGAGTC AGACTGGGAC TTCTGAAGAC ATTAAGCCGG
  CCTTACCAAA CTGCTCCCTT GTAATGCAAA ATGTCTTCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38676121	mCV23446957	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss323765038	CHEV_11_82249352	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29391008					SNP	A	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82326676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3396	CpG island 3396	534 bp distal
D11Bhm141	DNA segment, Chr 11, Boehm 141	1576 bp proximal
D11Pas12	DNA segment, Chr 11, Pasteur Institute 12	1394 bp distal
D11Pas13	DNA segment, Chr 11, Pasteur Institute 13	679 bp proximal
D11Pas23	DNA segment, Chr 11, Pasteur Institute 23	1054 bp proximal
D11Pas49	DNA segment, Chr 11, Pasteur Institute 49	363 bp proximal
Tmem132e	transmembrane protein 132E	within coordinates
Tssr103577	transcription start site region 103577	1017 bp downstream