rs29391229 SNP Detail

Summary

• ID
  rs29391229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69804675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC TCCGCCTCTG TCTCCCGCGG
  Y
  CTCGCGAGTG AAGAGTTCTA GGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss38675633	mCV23933422	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss132362922	ENSMUSSNP5486268	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss323732162	CHEV_11_69727351	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29391229					SNP	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69804675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3157	CpG island 3157	within coordinates
Gps2	G protein pathway suppressor 2	39 bp upstream
Neurl4	neuralized E3 ubiquitin protein ligase 4	27 bp downstream
Rr235842	regulatory region 235842	1926 bp proximal
Rr247070	regulatory region 247070	within coordinates
Rr402680	regulatory region 402680	within coordinates
Tssr102552	transcription start site region 102552	159 bp upstream
Tssr102553	transcription start site region 102553	303 bp upstream
Tssr102554	transcription start site region 102554	330 bp upstream
Tssr102555	transcription start site region 102555	387 bp upstream
Tssr102556	transcription start site region 102556	437 bp upstream