rs29391582 SNP Detail

Summary

• ID
  rs29391582
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6018177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCATGAAC ATACATATGC
  AAATATGCAT ATACAAAAAC AAGCACATAA GCACACAATA CACATGTACA CAAAACACAC
  AAATGTACAC ACCGGGTGAG GTCACAGCAA CACTCAGGGT ACTCTTTTGT TGTCACCTTT
  CAAAACTGGG TAGGCCGTGC TACACACGGT TTTGCAGTCA CTAAAGAGTG CAGTTTGAAG
  S
  CCACTGTGTC CCAGGCCTCT CCCCCTACTC TGTTACTGTG AGCACCTGGA CTTCCCCGAA
  GCCCCTCCTC CAGACCGAAG CATTAGAGGC AACACTTGGA GTCACCTGGC TGGGCCAGGA
  AAGGCAGAGG ATCCAGCGTT ACACAATGGG AGGAGGTGAG CTGCCGCCCG CCTGCCGGCG
  CGGCATGGCT CGGCGCCGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38678725	mCV22908220	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss131641302	ENSMUSSNP3197259	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29391582					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6018177 () rs orientation: forward

Symbol	Name	Function Class
Camk2b	calcium/calmodulin-dependent protein kinase II, beta	1815 bp upstream
Cpgi2551	CpG island 2551	1660 bp distal
Cpgi2552	CpG island 2552	94 bp proximal
Gm74282	predicted gene, 74282	within coordinates
Rr442231	regulatory region 442231	1939 bp distal
Rr442232	regulatory region 442232	within coordinates
Rr442233	regulatory region 442233	353 bp proximal
Rr442234	regulatory region 442234	875 bp proximal
Tssr106691	transcription start site region 106691	1812 bp upstream
Tssr106692	transcription start site region 106692	1793 bp upstream
Tssr106693	transcription start site region 106693	1766 bp upstream