rs29391593 SNP Detail

Summary

• ID
  rs29391593
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:85060054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGCTGGAC TTGAACTTGT AATAGTCTTC TCCCTTCTCC
  AGAATGCTGA GATTACAGGC ATGTGCGTCT GGTTTCTGTA GTGCTGGGCA TGAAACCCAG
  R
  ACATTCTGCG TGATAAGAAA GCACTCTGCC AACTATCCCC CTCCTAGTTT GTCCTCCCAC
  TCCAGTCTTT CCACTGTCTC TTCATAATAC ATTTTTAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss38677314	mCV24662544	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss132490429	ENSMUSSNP4747747	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs29391593					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:85060054 () rs orientation: forward

Symbol	Name	Function Class
Chct1	CHD1 helical C-terminal domain containing 1	Intron
Cpgi3451	CpG island 3451	876 bp proximal
Gm73307	predicted gene, 73307	387 bp downstream
Rr453329	regulatory region 453329	717 bp proximal
Rr453330	regulatory region 453330	990 bp proximal
Rr453331	regulatory region 453331	1187 bp proximal
Tssr3620	transcription start site region 3620	1840 bp upstream
Tssr103818	transcription start site region 103818	1846 bp upstream
Tssr103819	transcription start site region 103819	1869 bp upstream