rs29391897 SNP Detail

Summary

• ID
  rs29391897
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57721751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTT AAGTCATTTC CTACTTTCAT
  W
  CTCAACCTGG CTTCCAGAAG GGCCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38682493	mCV23860843	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss132181296	ENSMUSSNP3859743	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss323685767	CHEV_11_57644427	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29391897					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57721751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2911	CpG island 2911	1183 bp distal
Cpgi2912	CpG island 2912	310 bp proximal
Cpgi2913	CpG island 2913	1757 bp proximal
Gm32915	predicted gene, 32915	1183 bp upstream
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447813	regulatory region 447813	1441 bp distal
Rr447814	regulatory region 447814	178 bp distal
Rr447815	regulatory region 447815	1212 bp proximal
Rr447816	regulatory region 447816	1883 bp proximal
Tssr3506	transcription start site region 3506	1654 bp upstream
Tssr101646	transcription start site region 101646	761 bp upstream
Tssr101647	transcription start site region 101647	769 bp upstream
Tssr101648	transcription start site region 101648	782 bp upstream
Tssr108123	transcription start site region 108123	1962 bp upstream
Tssr108124	transcription start site region 108124	1905 bp upstream
Tssr108125	transcription start site region 108125	1860 bp upstream
Tssr108126	transcription start site region 108126	1679 bp upstream
Tssr108127	transcription start site region 108127	1612 bp upstream
Tssr108128	transcription start site region 108128	1600 bp upstream
Tssr108129	transcription start site region 108129	1465 bp upstream
Tssr108130	transcription start site region 108130	838 bp downstream
Tssr108131	transcription start site region 108131	1079 bp downstream
Tssr108132	transcription start site region 108132	1159 bp downstream
Tssr108133	transcription start site region 108133	1217 bp downstream
Tssr108134	transcription start site region 108134	1754 bp downstream