rs29392099 SNP Detail

Summary

• ID
  rs29392099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28533554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATCCACGC CCGTGGGTGT CGACGCACCG GCCGGAGCCG
  AGGGACAACT TTCCGCCGCT GGCGCTGAGC CTCCAGCCGC CTTAGACATG GTATCCGCGC
  R
  GCGGCAGGTG CGAGTGGGTA GAGGCGAAAC GACTGGCGAA GGTGCAGGCG CGGCTGGGTG
  GCCTCCTCCC ACACCCCTGT ACGCTTCCAG AGTCAGAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38686293	mCV23805096	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss131877086	ENSMUSSNP1787061	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29392099					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28533554 () rs orientation: forward

Symbol	Name	Function Class
Ccdc85a	coiled-coil domain containing 85A	within coordinates
Cpgi2667	CpG island 2667	within coordinates
Rr233134	regulatory region 233134	847 bp proximal
Rr246448	regulatory region 246448	within coordinates
Rr385862	regulatory region 385862	within coordinates
Tssr107205	transcription start site region 107205	520 bp downstream
Tssr107206	transcription start site region 107206	665 bp downstream
Tssr107207	transcription start site region 107207	706 bp downstream