rs29392269 SNP Detail

Summary

• ID
  rs29392269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95724561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTACCCAGA GGGGGCTGGG ACACCTCCAG CGGAGGGGGC
  GGCAAGAAGA CCTCGGCAGA CAACGGTGGA GGAGGCGGGG TTACAGGTGC TACAGGTGGA
  R
  GAGGCGGGGT TGCAGGCGCT ACCTGTCCCT TGGACTGGGG GATCCCACTG GCACCTTCCG
  CACTGCTAAA AGACCAGATT ATATGCTGAT TAGGGACGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38684110	mCV23213507	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss132668280	ENSMUSSNP2571892	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29392269					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95724561 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3604	CpG island 3604	within coordinates
Phospho1	phosphatase, orphan 1	1595 bp downstream
Rr369341	regulatory region 369341	305 bp downstream
Rr369342	regulatory region 369342	508 bp upstream
Rr455203	regulatory region 455203	1822 bp distal
Tssr110283	transcription start site region 110283	1912 bp upstream
Tssr110284	transcription start site region 110284	381 bp downstream
Tssr110285	transcription start site region 110285	400 bp downstream
Tssr110286	transcription start site region 110286	433 bp downstream
Tssr110287	transcription start site region 110287	1610 bp downstream