rs29393060 SNP Detail

Summary

• ID
  rs29393060
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3075790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGAAAGGCGT GGGTCACCAC CGCCCAGCTG TGTTTTTTTT TTTTTTTTTC TGATTGGCGA
  GCACAGCTGA GTGGGCGGGG CCGGTGATTG ACAGGCAGAT TGAGGTCGTG GCTACATAAC
  CATGTCATCC CCCTGCCTCA GCTCCTTCCT TACTCAAGGG AATCCCCCTG CCTTAGGGTG
  ACCAAAGCTG AGTGATAGGG CTGGCCCAAG TACAAGGGCT TCTGCTCTGG CAACACCCTG
  GCAGGTGACC TGAACAGGAG GTCTAAACAG CTGTTTGGTG CCTGTCTATT TGCAATAGCT
  R
  TGGTCCTCTA ACCTGTGCCT GTGAGCCACC AAGAGTGAAC GGAAACTAGA AGCATTGCCA
  CCAACAACTG GAGCAGTGAC CACACTGAAG TTTCTCTGTC GAGGGGGAAG GGGAGTAAGG
  AGAAAAAAAA AAAAAAAAGG CAAGTAAGCA AGCAAGCCAG CAAGCACAGG AGCACACTCT
  CGTGGAGGCC CACACCCTCC CTGTGCCTAC CCAAGATGTG TCAGTCAGAG AAGCATCCAG
  GACCGGAGCT CCAAGCAGCA GCAAAATGGT GAGATGCTGC CCATGAGACC TAACCCTCAA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38679654	mCV23826177	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29393060					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3075790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	1654 bp distal
Cpgi2432	CpG island 2432	1349 bp proximal
Gm74511	predicted gene, 74511	within coordinates
Pisd-ps1	phosphatidylserine decarboxylase, pseudogene 1	216 bp upstream
Rr369110	regulatory region 369110	1782 bp downstream
Rr441450	regulatory region 441450	1759 bp distal
Rr441453	regulatory region 441453	1328 bp distal
Rr441454	regulatory region 441454	1345 bp distal
Rr441455	regulatory region 441455	1120 bp distal
Rr441456	regulatory region 441456	within coordinates
Tssr100004	transcription start site region 100004	1759 bp downstream
Tssr100005	transcription start site region 100005	1736 bp downstream
Tssr106442	transcription start site region 106442	1870 bp upstream