rs29393105 SNP Detail

Summary

• ID
  rs29393105
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58884224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT TCACATACTC GGCAACCTCC
  R
  GTGCTGTATT ATAGCATCTG AGAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38684347	mCV23838193	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss132220991	ENSMUSSNP377762	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss323695532	CHEV_11_58806900	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29393105					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58884224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2948	CpG island 2948	846 bp proximal
Gm73767	predicted gene, 73767	1599 bp upstream
Gm74293	predicted gene, 74293	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	858 bp downstream
Trim11	tripartite motif-containing 11	1940 bp downstream
Tssr108185	transcription start site region 108185	1633 bp upstream