rs29393401 SNP Detail

Summary

• ID
  rs29393401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71642691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAAGGTGTG GATGGAGACT CGTGGCTGGA TGCTCTGTGT
  GCTGTTTTTC TTTGCTAGTC AGAAGCATCC CTGGCTGGGT CAGCTGCTTC AGGGTAACCT
  R
  TCTAACTGCT TTTCTGGGTG TCTGTGCTCC GCTGATGGTC TTAGTCCTAC CAGCTAGTCC
  ACGGGGAGTC CGAATGGGAA TAGGACCTCT GCCCCATCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
ss38679430	mCV23438013	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss132393515	ENSMUSSNP308906	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss323743714	CHEV_11_71565367	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
rs29393401					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71642691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3209	CpG island 3209	10 bp distal
Rr236016	regulatory region 236016	1691 bp distal
Rr236017	regulatory region 236017	710 bp proximal
Rr247127	regulatory region 247127	within coordinates
Tssr102813	transcription start site region 102813	1928 bp downstream
Tssr102814	transcription start site region 102814	1174 bp downstream
Tssr102815	transcription start site region 102815	870 bp downstream
Tssr102816	transcription start site region 102816	826 bp downstream
Tssr102817	transcription start site region 102817	806 bp downstream
Wscd1	WSC domain containing 1	within coordinates