rs29393431 SNP Detail

Summary

• ID
  rs29393431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68920037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGATCTG ATGCCCTCTT
  CTGGAATACA GGTGCATACA CAGACAGAGC GACTCATCCG TTAGAGAGTG GTGACCTGAG
  CTTGTTCCCA GACTCTGCAT GGTGAGAGAA GAGAGCTGAC TCCCACAAGT TGTCCTTTGA
  CCTCCACAAA AGTGAAATGA TACCCCCCAC CCCCAGTAAA TGTAATAAAA CAAGCTCCCA
  R
  AACTGTAGCT TGGAATATAG AATTCTGTTG GGTTTTGCTT TGCTTTGTTT TCGTTATTGC
  TTTTTTTTTT TTTAACCTGA GGCAGTCTTG TTGTATAGCC CATGCTGGCC TCGAACTCCC
  GGAGGTCCTG CTACCTCAGC TTTCTGATTA CTGGGACTAC AAGTATGTAT GTATGTACCA
  CCGTGTTCAA GAGTGTAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38680605	mCV23351377	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss132347525	ENSMUSSNP357691	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss323727076	CHEV_11_68842713	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29393431					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68920037 () rs orientation: forward

Symbol	Name	Function Class
Ctc1	CTS telomere maintenance complex component 1	within coordinates
Gm74108	predicted gene, 74108	within coordinates
Rr235731	regulatory region 235731	37 bp distal
Rr251243	regulatory region 251243	637 bp distal
Rr251244	regulatory region 251244	564 bp proximal
Rr251245	regulatory region 251245	1564 bp proximal
Rr253641	regulatory region 253641	within coordinates
Rr386226	regulatory region 386226	1085 bp downstream
Tssr102361	transcription start site region 102361	1875 bp downstream
Tssr102362	transcription start site region 102362	1852 bp downstream
Tssr102363	transcription start site region 102363	1229 bp downstream