rs29393486 SNP Detail

Summary

• ID
  rs29393486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68916038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGATATGC ACGCATGTAA AACATCAATC TGCACAAAAA
  TGAATACATT AAAAAAAGAA AAGACAGAGG TTCTGGGAGG TAGTAGCACA CGCCTTTAAT
  Y
  CCAGCAGTCA GGAGGCAGAG GCAGAGGTTG TGACACCTGC AATGTGAGCC CCCTGAGGAG
  GAGGAAATAG TGGCCAGCGG ACCTCTGTCT CCTGTGCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss38679668	mCV23351000	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss132347442	ENSMUSSNP5564503	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss323727050	CHEV_11_68838714	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs29393486					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68916038 () rs orientation: forward

Symbol	Name	Function Class
Ctc1	CTS telomere maintenance complex component 1	within coordinates
Gm74108	predicted gene, 74108	within coordinates
Rr386226	regulatory region 386226	574 bp upstream
Tssr102357	transcription start site region 102357	831 bp upstream
Tssr102358	transcription start site region 102358	854 bp upstream
Tssr102359	transcription start site region 102359	1612 bp upstream
Tssr102360	transcription start site region 102360	1876 bp upstream