rs29393622 SNP Detail

Summary

• ID
  rs29393622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88433251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTACACAAA GGAAACCTTC TTGGGGGATG TTTCATATCA
  GTCACACCTC AGCTGCGGAT GTGGTGTGTG ACTGTTGCGG GTGAGTGCAC TTGTGTGTAT
  R
  TGTGTGTGTG GGGGGGCAAC ATGTGGGTAC AAGAGTGCGT GCATGCATGC AAAGGATGGG
  ATAAACCCCA AGTTTCTCCG TGGTTATCTG GCAGATCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38680232	mCV23128079	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss132535264	ENSMUSSNP3764600	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss323779789	CHEV_11_88355927	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29393622					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88433251 () rs orientation: forward

Symbol	Name	Function Class
Msi2	musashi RNA-binding protein 2	within coordinates
Tssr110017	transcription start site region 110017	1957 bp upstream
Tssr110018	transcription start site region 110018	779 bp upstream