rs29393860 SNP Detail

Summary

• ID
  rs29393860
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:4215497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTC TCTCGCCGAA TGCTTCTCTG
  W
  ACTGCTTCAT AGTTAGTGGG GAGAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss38680631	mCV22900092	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss131631475	ENSMUSSNP215073	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29393860					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4215497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2511	CpG island 2511	957 bp proximal
Lif	leukemia inhibitory factor	within coordinates
Rr385518	regulatory region 385518	1121 bp upstream
Rr441796	regulatory region 441796	1903 bp distal
Rr441797	regulatory region 441797	854 bp distal
Rr441798	regulatory region 441798	within coordinates
Rr441799	regulatory region 441799	1108 bp proximal
Rr441800	regulatory region 441800	1609 bp proximal
Tssr100120	transcription start site region 100120	1184 bp downstream
Tssr100121	transcription start site region 100121	233 bp downstream
Tssr100122	transcription start site region 100122	984 bp upstream
Tssr100123	transcription start site region 100123	1028 bp upstream
Tssr100124	transcription start site region 100124	1170 bp upstream