rs29395267 SNP Detail

Summary

• ID
  rs29395267
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:113510428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATCTACA GGCCAAGCTA
  GCTCTCTCGG GGCCCGGGCA AGCTCTCTCA GACGCCAGAA GGGCCAGCAC GAGCCAGCCA
  AGGAAGCTGG GAGCCCCGGG AGCCACTGCT GAGCGCCAAA CACCCGCTAA GCCTGCTGTG
  CTCCTGGACG CCCAGCTGGG TAAAAGAACA GCTTCTGGGT GCTAGAGAAC ACAGGGAAGC
  R
  AGTGCTCGAG GAAAACCAAG GTGAGGGGTG CCAGTGTGCA TACGCGTGTG TCACCGTGAG
  ATGGAGGGAG GGACAAGCAC ACTTTGGGCA CCTGCATGCA TCTGTTCTGG GGATAGACCG
  CCGATCCCGG CGACCTGCAC GTTGGTCCCG GCGCGCAAAT TCTCTGTTTT TGTGCCTTTG
  GAGGTGACAG GTGGATGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss38683686	mCV22621544	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss132840902	ENSMUSSNP7177046	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29395267					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:113510428 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4077	CpG island 4077			within coordinates
Rr403100	regulatory region 403100			1634 bp downstream
Rr459386	regulatory region 459386			1283 bp distal
Rr459387	regulatory region 459387			1179 bp distal
Rr459388	regulatory region 459388			116 bp distal
Rr459389	regulatory region 459389			within coordinates
Slc39a11	solute carrier family 39 (metal ion transporter), member 11			Intron
				Noncoding-Transcript-Variant
Sstr2	somatostatin receptor 2			mRNA-UTR
Tssr105751	transcription start site region 105751			256 bp downstream
Tssr105752	transcription start site region 105752			217 bp downstream