rs29395294 SNP Detail

Summary

• ID
  rs29395294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121279956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCACCAG TGGGAACTAA
  GTTATTTAGA GTAATCATAG TTTAGCATCC CCGCTACCTA CATCTTTATA CAACCTGAAG
  TGGAAGCACC TCTTGCAATC GTGCCTCCTC TCTGTTAAGA AGGATACATT TCCGGATGGA
  AAAGAAAAAG CAGTGGATGA AAATTACGAA AGCATTTGTG AACATTGTTC TAAGCGCCAC
  R
  GCTGTGCTGT GATTCAGGAC AAGGCCGGTT TGGCTCAGAA CAGGCTGGTC TTGGAGCAAG
  GTGACCGCTG CCTCCCTGCA GGAACACTAT CCTTTCAAAG AGTTGACTAT AATAAGCTCT
  AATTACAAGA TATGGCTGCC AGTCTAGAAT AGGTAATTGA GATAGGGTTT TTCGAGACAG
  GGTTTCCCTG AGTAGCCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38684668	mCV24693022	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss132911608	ENSMUSSNP5693965	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29395294					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121279956 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	608 bp distal
Mir7236	microRNA 7236	1926 bp upstream
Rab40b	Rab40B, member RAS oncogene family	879 bp upstream
Rr461969	regulatory region 461969	1143 bp distal
Rr461970	regulatory region 461970	881 bp distal
Rr461971	regulatory region 461971	389 bp distal
Tssr112458	transcription start site region 112458	863 bp upstream