rs29395339 SNP Detail

Summary

• ID
  rs29395339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104124584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCGA GGTTTTCTGG TTAATTTTAC
  Y
  GCTGAATACT GGTGCGGGTA AGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38683086	mCV24642324	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss132752569	ENSMUSSNP6642933	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29395339					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104124584 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3985	CpG island 3985	527 bp distal
Cpgi3986	CpG island 3986	38 bp proximal
Gm53648	predicted gene, 53648	within coordinates
Gm72530	predicted gene, 72530	1944 bp upstream
Mapt	microtubule-associated protein tau	within coordinates
Rr457762	regulatory region 457762	1955 bp distal
Rr457763	regulatory region 457763	1454 bp distal
Rr457764	regulatory region 457764	1571 bp distal
Rr457765	regulatory region 457765	1354 bp distal
Rr457766	regulatory region 457766	1092 bp distal
Rr457767	regulatory region 457767	within coordinates