rs29395635 SNP Detail

Summary

• ID
  rs29395635
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58275963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTT GCTATGGACC CAAGGGTGGC
  Y
  TTCACTCAGC CCTCCTGCCT GTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38689264	mCV25372097	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss132196821	ENSMUSSNP5774892	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss323690040	CHEV_11_58198639	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29395635					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58275963 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101735	transcription start site region 101735	517 bp downstream
Tssr101736	transcription start site region 101736	449 bp downstream
Tssr101737	transcription start site region 101737	409 bp downstream
Tssr101738	transcription start site region 101738	391 bp downstream
Tssr101739	transcription start site region 101739	1586 bp upstream
Tssr101740	transcription start site region 101740	1650 bp upstream
Tssr101741	transcription start site region 101741	1678 bp upstream
Tssr108157	transcription start site region 108157	1633 bp downstream
Tssr108158	transcription start site region 108158	1685 bp downstream