rs29395652 SNP Detail

Summary

• ID
  rs29395652
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96242048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACT CCCACTTCCC CCTAAATGAG
  M
  TTTTTTTTTC TTTTCTTTTG GGGGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38688893	mCV27576465	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss132677038	ENSMUSSNP2233451	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29395652					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96242048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	790 bp proximal
Cpgi3657	CpG island 3657	1446 bp proximal
Hoxb2	homeobox B2	410 bp upstream
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	within coordinates
Rr141	regulatory region 141	774 bp distal
Rr454	regulatory region 454	1002 bp distal
Rr455383	regulatory region 455383	1147 bp distal
Rr455384	regulatory region 455384	754 bp distal
Rr455385	regulatory region 455385	within coordinates
Tssr104519	transcription start site region 104519	374 bp upstream
Tssr104520	transcription start site region 104520	647 bp upstream
Tssr104521	transcription start site region 104521	676 bp upstream
Tssr104522	transcription start site region 104522	728 bp upstream
Tssr104523	transcription start site region 104523	752 bp upstream
Tssr104524	transcription start site region 104524	832 bp upstream
Tssr104525	transcription start site region 104525	898 bp upstream
Tssr104526	transcription start site region 104526	1642 bp upstream
Tssr104527	transcription start site region 104527	1664 bp upstream
Tssr104528	transcription start site region 104528	1853 bp upstream
Tssr104529	transcription start site region 104529	1905 bp upstream
Tssr104530	transcription start site region 104530	1933 bp upstream
Tssr110331	transcription start site region 110331	1095 bp upstream
Tssr110332	transcription start site region 110332	1023 bp upstream