rs29395978 SNP Detail

Summary

• ID
  rs29395978
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:20774431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AATCTTTTAT ACTCCCGTAC CCCAAGCTTC TGCTGAGTTA CACATGCTTG
  S
  CCACTCAGAA GATCCCTCGG GGGGGTGGGG GGGGGTGCTT ACTGCATGAA           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss38687510	mCV23238033	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	G
ss131781695	ENSMUSSNP4506458	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		G		G
ss323592816	CHEV_11_20724434	CHEVERUD	SCREENING_POP	f	SNP					C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29395978					SNP	G	C	C	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:20774431 () rs orientation: forward

Symbol	Name	Function Class
Lgalsl	galectin like	within coordinates
Rr443482	regulatory region 443482	836 bp distal