rs29396038 SNP Detail

Summary

• ID
  rs29396038
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29453254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTACTCTAA TAGAACTTAA AATATTTGTT GGTTTAATAA
  AACCAGAAAA GCAGCTGTGG TATCCAGTTG TTATACTGAG GAACAAGTAA CATAGCTTAC
  M
  TAAGTATATG TAAAATGAAG TTTAAAGTCA GTGAGACTAC TAATAGAGTT AGAAACCTGC
  TAACAAATAT TACATAGTAT TGTCTCATTT CTATTATTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38689700	mCV25280104	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C	A
ss131895755	ENSMUSSNP5503315	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		A
ss323610824	CHEV_11_29403254	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29396038					SNP	C	C	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29453254 () rs orientation: forward

Symbol	Name	Function Class
Ccdc88a	coiled coil domain containing 88A	within coordinates
Tssr100714	transcription start site region 100714	723 bp upstream