rs29396068 SNP Detail

Summary

• ID
  rs29396068
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69298338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCTCGTCC CACCTGCTGC AAGCGGCCAA TCCGGGGTCC
  CAGCTCGGCG AAGCTTCCTC CATAGCGAAG GGCCCTATGG TAGCAGCATA CGGCTTCCTC
  R
  CTGTCGTGCT CTGATTCATA CAACTGTCCA AGCTGTTCCC ACAACCCTGG CTGCGCTGGC
  TCCCGGAGCA ATGCCTGGAC ACAGCCATGT AGGGATTCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38688915	mCV22780201	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss132355533	ENSMUSSNP4421572	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
ss323729410	CHEV_11_69221014	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29396068					SNP	A	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69298338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	1007 bp proximal
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	462 bp proximal
Rr402670	regulatory region 402670	1083 bp upstream
Rr402671	regulatory region 402671	1847 bp upstream
Tssr3543	transcription start site region 3543	1168 bp downstream
Tssr102455	transcription start site region 102455	634 bp downstream
Tssr102456	transcription start site region 102456	1399 bp upstream
Tssr102457	transcription start site region 102457	1769 bp upstream
Tssr108660	transcription start site region 108660	1601 bp upstream
Tssr108661	transcription start site region 108661	742 bp upstream
Tssr108662	transcription start site region 108662	94 bp downstream
Tssr108663	transcription start site region 108663	125 bp downstream
Tssr108664	transcription start site region 108664	301 bp downstream
Tssr108665	transcription start site region 108665	1046 bp downstream
Tssr108666	transcription start site region 108666	1634 bp downstream
Tssr108667	transcription start site region 108667	1880 bp downstream
Tssr108668	transcription start site region 108668	1901 bp downstream
Tssr108669	transcription start site region 108669	1916 bp downstream