rs29396280 SNP Detail

Summary

• ID
  rs29396280
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104124810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAT ACTACCCATC CCTCGCCACA
  S
  GACGGGCTGC TGGGAACAGG ATTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38696703	mCV24642334	ABI	CRAMUS_MOUSE	f	SNP	C	G	C	C
ss132752573	ENSMUSSNP3844712	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29396280					SNP	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104124810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3985	CpG island 3985	753 bp distal
Cpgi3986	CpG island 3986	within coordinates
Gm53648	predicted gene, 53648	within coordinates
Mapt	microtubule-associated protein tau	within coordinates