rs29396402 SNP Detail

Summary

• ID
  rs29396402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67573455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG GACTCTGGTC TTTTCTTCCT
  Y
  GGCAGGAACT GGAGCGGCTG GAGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38697105	mCV24738355	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss132330990	ENSMUSSNP6481439	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss323721076	CHEV_11_67496131	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29396402					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67573455 () rs orientation: forward

Symbol	Name	Function Class
Gas7	growth arrest specific 7	within coordinates
Glp2r	glucagon-like peptide 2 receptor	within coordinates
Tssr102272	transcription start site region 102272	464 bp downstream
Tssr102273	transcription start site region 102273	94 bp downstream
Tssr102274	transcription start site region 102274	877 bp upstream
Tssr102275	transcription start site region 102275	1259 bp upstream
Tssr102276	transcription start site region 102276	1569 bp upstream
Tssr102277	transcription start site region 102277	1983 bp upstream