rs29396563 SNP Detail

Summary

• ID
  rs29396563
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACT CAGGGTCTCC CACATTTTCT
  S
  TATGTTCTCT ACAGTGAACT GAAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss38689351	mCV24154329	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss132349992	ENSMUSSNP3870304	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss323727811	CHEV_11_68969950	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs29396563					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047274 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	624 bp upstream
Cpgi3111	CpG island 3111	491 bp proximal
Rr449891	regulatory region 449891	294 bp proximal
Rr449892	regulatory region 449892	552 bp proximal
Rr449893	regulatory region 449893	1661 bp proximal
Tssr102419	transcription start site region 102419	440 bp upstream
Tssr102420	transcription start site region 102420	465 bp upstream
Tssr102421	transcription start site region 102421	584 bp upstream
Tssr102422	transcription start site region 102422	605 bp upstream
Tssr102423	transcription start site region 102423	615 bp upstream
Tssr102424	transcription start site region 102424	636 bp upstream