rs29397085 SNP Detail

Summary

• ID
  rs29397085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:75456565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAGCCATGG CTACACAGAG ACACCCTGTC TTAAAAAAGA
  CAAAACGGGG GGCGGAGGGG GATGGAAATC CTGATACACT CCCACAATCT CAGGGACTAG
  R
  CAGAGTGAGG CAGGAAGATT ATGATTTTGA GTCCAGTTTG GCTACACAGT AAAACCTTAT
  CTAAAAAAAC AAAACAAACA AAAAAAGTGT CAGCTTCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38696331	mCV22729088	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss132438541	ENSMUSSNP3213320	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss323751030	CHEV_11_75379241	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29397085					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75456565 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D11Jcs7	DNA segment, Chr 11, John C. Schimenti 7			1845 bp distal
Rr451208	regulatory region 451208			1053 bp distal
Slc43a2	solute carrier family 43, member 2			Intron
				Noncoding-Transcript-Variant
Tssr102978	transcription start site region 102978			1120 bp upstream