rs29397162 SNP Detail

Summary

• ID
  rs29397162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:113508816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCTGTTT TTGAATGAGC
  TATTTTGCTA GACAATACAC AAACTGCAGC AACAGGTGAC GAACTTTTAC AAGGTCTCAT
  GACACTCGAA GAGAGCCGAG CTCAGAATGG ACACTTCCTG GCTCTTCATC CTTCTCTGTT
  CCCGGAAGGG TTTTTAACTA GAGGGGGCAA TAGGCATTGT AACAACTGTG TCTCAGGGAG
  R
  AGGAGGCCTG AGCTCACTCA GGGCCCCTTC TTTCCCCCAG GGCCACTCCC CTCGTTCTGA
  GAGCTGCACT ATTCAACCCT TCAACCCCGC CCATAAAAAA ACCTAAAGAC AAGCCAACCC
  ACACAACACT AGGACCCGAC AACCACTGCT TCAATCTCCA TCAAGTCCAC AGAGCCCACA
  CATCTCGTAG AGATGGTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38694365	mCV22621542	ABI	CRAMUS_MOUSE	f	SNP	A		G	G
ss132840882	ENSMUSSNP2014653	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29397162					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:113508816 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4077	CpG island 4077			609 bp proximal
Rr403100	regulatory region 403100			22 bp downstream
Rr459386	regulatory region 459386			within coordinates
Rr459387	regulatory region 459387			412 bp proximal
Rr459388	regulatory region 459388			862 bp proximal
Rr459389	regulatory region 459389			1497 bp proximal
Slc39a11	solute carrier family 39 (metal ion transporter), member 11			Intron
				Noncoding-Transcript-Variant
Sstr2	somatostatin receptor 2			1352 bp upstream
Tssr105751	transcription start site region 105751			1328 bp upstream
Tssr105752	transcription start site region 105752			1390 bp upstream